Exploring a Nonmodel Teleost Genome Through RAD Sequencing—Linkage Mapping in Common Pandora, Pagellus erythrinus and Comparative Genomic Analysis
نویسندگان
چکیده
منابع مشابه
Exploring a Nonmodel Teleost Genome Through RAD Sequencing—Linkage Mapping in Common Pandora, Pagellus erythrinus and Comparative Genomic Analysis
Common pandora (Pagellus erythrinus) is a benthopelagic marine fish belonging to the teleost family Sparidae, and a newly recruited species in Mediterranean aquaculture. The paucity of genetic information relating to sparids, despite their growing economic value for aquaculture, provides the impetus for exploring the genomics of this fish group. Genomic tool development, such as genetic linkage...
متن کاملComparative Ontogeny of the Digestive Tract in Sharpsnout Sea Bream Diplodus puntazzo Cetti and Common Pandora Pagellus erythrinus L
The ontogeny of the alimentary tract and its associated structures (liver, pancreas, gall bladder) was compared between sharpsnout sea bream Diplodus puntazzo and Pagellus erythrinus and some differences were highlighted. The first goblet cells appeared earlier in sharpsnout seabream (5-7 DAH) and later in common pandora (9-11 DAH), as well as taste buds which appeared at 11 DAH in sharpsnout s...
متن کاملSpatial Distribution Modelling of Juvenile Common Pandora (Pagellus erythrinus Linnaeus, 1758) in Relation to Habitat in the Shallow Waters of Gökçeada Using GIS
The distribution of juvenile Pagellus erythrinus (Linnaeus, 1758) species was studied by the abundance, density and habitat preferences in the shallow waters of Gökçeada. Fish samples were obtained in experimental beach seine and beam trawl surveys carried out between 2013 June to 2014 May in the shallow waters of Gökçeada. To understand the habitat preferences of the species, sediment samples ...
متن کاملMass production of SNP markers in a nonmodel passerine bird through RAD sequencing and contig mapping to the zebra finch genome.
Here, we present an adaptation of restriction-site-associated DNA sequencing (RAD-seq) to the Illumina HiSeq2000 technology that we used to produce SNP markers in very large quantities at low cost per unit in the Réunion grey white-eye (Zosterops borbonicus), a nonmodel passerine bird species with no reference genome. We sequenced a set of six pools of 18-25 individuals using a single sequencin...
متن کاملIdentification of SNPs in a nonmodel macrofungus (Lepista nuda, Basidiomycota) through RAD sequencing
Lepista nuda is a wild edible fungus that is valued for its odor and taste. Recent studies identified intraspecific morphological and genetic differences in L. nuda. Although single-nucleotide polymorphisms (SNPs) are useful for revealing intraspecific differences, the traditional methods used for investigating SNPs are time consuming and expensive, and they only locate a limited number of SNPs...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: G3 Genes|Genomes|Genetics
سال: 2016
ISSN: 2160-1836
DOI: 10.1534/g3.115.023432